Available state frequency options
State frequency types¶
These specify how the frequencies of nucleotides or amino acids are obtained.
In [1]:
Copied!
from piqtree import available_freq_type
available_freq_type()
from piqtree import available_freq_type
available_freq_type()
Out[1]:
| Freq Type | Description |
|---|---|
| F | Empirical state frequency observed from the data. |
| FO | State frequency optimized by maximum-likelihood from the data. Note that this is with letter-O and not digit-0. |
| FQ | Equal state frequency. |
3 rows x 2 columns