Citation

Please cite piqtree as follows:

McArthur RN, Wong TK-F, Lang Y, Morris RA, Caley K, Mallawaarachchi V, Minh BQ, Huttley G, 2026. "piqtree: A Python Package for Seamless Phylogenetic Inference with IQ-TREE", Molecular Biology and Evolution, msag061, 10.1093/molbev/msag061.

@article{piqtree,
  author    = {McArthur, Robert Neil and Wong, Thomas King-Fung and Lang, Yapeng and Morris, Richard Andrew and Caley, Katherine and Mallawaarachchi, Vijini and Minh, Bui Quang and Huttley, Gavin},
  title     = {piqtree: A Python Package for Seamless Phylogenetic Inference with IQ-TREE},
  journal   = {Molecular Biology and Evolution},
  year      = {2026},
  pages     = {msag061},
  doi       = {10.1093/molbev/msag061},
  url       = {https://doi.org/10.1093/molbev/msag061},
}

Please cite cogent3 as follows:

Huttley, G. (2021). cogent3: comparative genomics toolkit (2020.12.21). 10.5281/zenodo.4542532

@misc{cogent3,
  title = {cogent3: comparative genomics toolkit (2020.12.21)},
  author = {Huttley, Gavin A},
  year = {2021},
  doi = {10.5281/zenodo.4542532},
}